质粒名称: | pMK288 (mAID-Bsr) |
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出品公司: | addgene |
目录编号: | 72826 |
存储实验室: | Masato Kanemaki |
载体骨架基本信息 |
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载体名称: | pBluescript KS(-) |
空载体大小: | 2875 bp |
完整质粒大小: | 5051 bp |
载体类型: | 哺乳细胞表达 |
筛选标记: | Blasticidin |
载体抗性: | 氨苄霉素 |
生长温度: | 37 ℃ |
宿主菌: | DH5a |
拷贝数: | 高拷贝 |
插入基因信息 |
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插入基因名称: | AID-Bsr |
物种来源: | H. sapiens (human), M. musculus (mouse), R. norvegicus (rat), G. gallus (chicken |
插入大小: | 2176 bp |
标签/融合蛋白: | mAID (C terminal on backbone) |
克隆方法: | 限制性内切酶 |
5’克隆位点: | BamHI (未破坏) |
3’克隆位点: | BamHI (未破坏) |
5’测序引物 | GTAAAACGACGGCCAGT |
3’测序引物 | GGAAACAGCTATGACCATG |
文献引用方法 |
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材料和方法部分: | pMK288 (mAID-Bsr) was a gift from Masato Kanemaki (Addgene plasmid # 72826 ; http://n2t.net/addgene:72826 ; RRID:Addgene_72826) |
参考文献部分: | Rapid Protein Depletion in Human Cells by Auxin-Inducible Degron Tagging with Short Homology Donors. Natsume T, Kiyomitsu T, Saga Y, Kanemaki MT. Cell Rep. 2016 Apr 5;15(1):210-8. doi: 10.1016/j.celrep.2016.03.001. Epub 2016 Mar 24. 10.1016/j.celrep.2016.03.001 PubMed 270 |
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载体基本信息
载体图谱质粒图谱和多克隆位点信息
载体简介
载体序列
LOCUS pMK288 (mAID-Bsr) 5051 bp ds-DNA circular SYN 12-MAY-2021 DEFINITION C-terminal tagging with mAID using CRISPR/Cas9. ACCESSION . VERSION . KEYWORDS pMK288 (mAID-Bsr) SOURCE synthetic DNA construct ORGANISM synthetic DNA construct REFERENCE 1 (bases 1 to 5051) AUTHORS Natsume T, Kiyomitsu T, Saga Y, Kanemaki MT TITLE Rapid Protein Depletion in Human Cells by Auxin-Inducible Degron Tagging with Short Homology Donors. JOURNAL Cell Rep. 2016 Apr 5;15(1):210-8. doi: 10.1016/j.celrep.2016.03.001. Epub 2016 Mar 24. PUBMED 27052166 REFERENCE 2 (bases 1 to 5051) AUTHORS . TITLE Direct Submission JOURNAL Exported May 12, 2021 from SnapGene Server 1.1.58 http://www.biofeng.com FEATURES Location/Qualifiers source 1..5051 /organism="synthetic DNA construct" /mol_type="other DNA" rep_origin 4..459 /direction=RIGHT /label=f1 ori /note="f1 bacteriophage origin of replication; arrow indicates direction of (+) strand synthesis" primer_bind complement(91..110) /label=F1ori-R /note="F1 origin, reverse primer" primer_bind 301..322 /label=F1ori-F /note="F1 origin, forward primer" primer_bind 585..607 /label=M13/pUC Forward /note="In lacZ gene" primer_bind 599..616 /label=M13 Forward /note="In lacZ gene. Also called M13-F20 or M13 (-21) Forward" primer_bind 600..616 /label=M13 fwd /note="common sequencing primer, one of multiple similar variants" primer_bind 626..645 /label=T7 /note="T7 promoter, forward primer" promoter 626..644 /label=T7 promoter /note="promoter for bacteriophage T7 RNA polymerase" CDS 681..884 /codon_start=1 /product="minimal degron from the auxin-responsive IAA17 protein of Arabidopsis thaliana (Kubota et al., 2013)" /label=mini-AID /note="acts as an auxin-inducible degron (AID) in the presence of TIR1" /translation="KEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEA AAFVKVSMDGAPYLRKIDLRMYK" polyA_signal 1005..1126 /label=SV40 poly(A) signal /note="SV40 polyadenylation signal" primer_bind complement(1042..1061) /label=SV40pA-R /note="SV40 polyA, reverse primer" primer_bind 1096..1115 /label=EBV-rev /note="SV40 polyA terminator, reverse primer" protein_bind complement(1157..1190) /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." promoter 1251..1750 /label=PGK promoter /note="mouse phosphoglycerate kinase 1 promoter" primer_bind complement(1286..1309) /label=MSCV-rev /note="Murine stem cell virus, reverse primer" primer_bind 1683..1702 /label=mPGK-F /note="Mouse PGK promoter, forward primer" protein_bind complement(2781..2814) /label=loxP /bound_moiety="Cre recombinase" /note="Cre-mediated recombination occurs in the 8-bp core sequence (GCATACAT)." primer_bind complement(2863..2883) /label=T3 /note="T3 promoter, forward primer" promoter complement(2863..2881) /label=T3 promoter /note="promoter for bacteriophage T3 RNA polymerase" primer_bind complement(2902..2918) /label=M13 rev /note="common sequencing primer, one of multiple similar variants" primer_bind complement(2902..2918) /label=M13 Reverse /note="In lacZ gene. Also called M13-rev" primer_bind complement(2915..2937) /label=M13/pUC Reverse /note="In lacZ gene" protein_bind 2926..2942 /label=lac operator /bound_moiety="lac repressor encoded by lacI" /note="The lac repressor binds to the lac operator to inhibit transcription in E. coli. This inhibition can be relieved by adding lactose or isopropyl-beta-D-thiogalactopyranoside (IPTG)." promoter complement(2950..2980) /label=lac promoter /note="promoter for the E. coli lac operon" protein_bind 2995..3016 /label=CAP binding site /bound_moiety="E. coli catabolite activator protein" /note="CAP binding activates transcription in the presence of cAMP." primer_bind complement(3133..3150) /label=L4440 /note="L4440 vector, forward primer" rep_origin complement(3304..3892) /direction=LEFT /label=ori /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of replication" primer_bind complement(3384..3403) /label=pBR322ori-F /note="pBR322 origin, forward primer" CDS complement(4063..4923) /codon_start=1 /gene="bla" /product="beta-lactamase" /label=AmpR /note="confers resistance to ampicillin, carbenicillin, and related antibiotics" /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS LIKHW" primer_bind 4686..4705 /label=Amp-R /note="Ampicillin resistance gene, reverse primer" promoter complement(4924..5028) /gene="bla" /label=AmpR promoter ORIGIN 1 ctgacgcgcc ctgtagcggc gcattaagcg cggcgggtgt ggtggttacg cgcagcgtga 61 ccgctacact tgccagcgcc ctagcgcccg ctcctttcgc tttcttccct tcctttctcg 121 ccacgttcgc cggctttccc cgtcaagctc taaatcgggg gctcccttta gggttccgat 181 ttagtgcttt acggcacctc gaccccaaaa aacttgatta gggtgatggt tcacgtagtg 241 ggccatcgcc ctgatagacg gtttttcgcc ctttgacgtt ggagtccacg ttctttaata 301 gtggactctt gttccaaact ggaacaacac tcaaccctat ctcggtctat tcttttgatt 361 tataagggat tttgccgatt tcggcctatt ggttaaaaaa tgagctgatt taacaaaaat 421 ttaacgcgaa ttttaacaaa atattaacgc ttacaatttc cattcgccat tcaggctgcg 481 caactgttgg gaagggcgat cggtgcgggc ctcttcgcta ttacgccagc tggcgaaagg 541 gggatgtgct gcaaggcgat taagttgggt aacgccaggg ttttcccagt cacgacgttg 601 taaaacgacg gccagtgagc gcgcgtaata cgactcacta tagggcgaat tggagctccc 661 cgggatccgg tgcaggcgcc aaggagaaga gtgcttgtcc taaagatcca gccaaacctc 721 cggccaaggc acaagttgtg ggatggccac cggtgagatc ataccggaag aacgtgatgg 781 tttcctgcca aaaatcaagc ggtggcccgg aggcggcggc gttcgtgaag gtatcaatgg 841 acggagcacc gtacttgagg aaaatcgatt tgaggatgta taaataatct agataactga 901 tcataatcag ccataccaca tttgtagagg ttttacttgc tttaaaaaac ctcccacacc 961 tccccctgaa cctgaaacat aaaatgaatg caattgttgt tgttaacttg tttattgcag 1021 cttataatgg ttacaaataa agcaatagca tcacaaattt cacaaataaa gcattttttt 1081 cactgcattc tagttgtggt ttgtccaaac tcatcaatgt atcttaacgc gtcgatcata 1141 ttcaataacc cttaatataa cttcgtataa tgtatgctat acgaagttat taggtctgaa 1201 gaggagttta cgtccagcca agcttaggat ctcgacctcg aaattctacc gggtagggga 1261 ggcgcttttc ccaaggcagt ctggagcatg cgctttagca gccccgctgg gcacttggcg 1321 ctacacaagt ggcctctggc ctcgcacaca ttccacatcc accggtaggc gccaaccgac 1381 tccgttcttt ggtggcccct tcgcgccacc ttctactcct cccctagtca ggaagttccc 1441 ccccgccccg cagctcgcgt cgtgcaggac gtgacaaatg gaagtagcac gtctcactag 1501 tctcgtgcag atggacagca ccgctgagca atggaagcgg gtaggccttt ggggcagcgg 1561 ccaatagcag ctttgctcct tcgctttctg ggctcagagg ctgggaaggg gtgggtccgg 1621 gggcgggctc aggggcgggc tcaggggcgg ggcgggcgcc cgaaggtcct ccggaggccc 1681 ggcattctgc acgcttcaaa agcgcacgtc tgccgcgctg ttctcctctt cctcatctcc 1741 gggcctttcg acctgcatcc atctagatct cgagcagctg aagcttaccg ctagcatgaa 1801 aacatttaac atttctcaac aagatctaga attagtagaa gtagcgacag agaagattac 1861 aatgctttat gaggataata aacatcatgt gggagcggca attcgtacga aaacaggaga 1921 aatcatttcg gcagtacata ttgaagcgta tataggacga gtaactgttt gtgcagaagc 1981 cattgcgatt ggtagtgcag tttcgaatgg acaaaaggat tttgacacga ttgtagctgt 2041 tagacaccct tattctgacg aagtagatag aagtattcga gtggtaagtc cttgtggtat 2101 gtgtagggag ttgatttcag actatgcacc agattgtttt gtgttaatag aaatgaatgg 2161 caagttagtc aaaactacga ttgaagaact cattccactc aaatataccc gaaattaagc 2221 tagccgcccg ccccacgacc cgcagcgccc gaccgaaagg agcgcacgac cccatgcatc 2281 gatgatatca gatccccggg atgcagaaat tgatgatcta ttaaacaata aagatgtcca 2341 ctaaaatgga agtttttcct gtcatacttt gttaagaagg gtgagaacag agtacctaca 2401 ttttgaatgg aaggattgga gctacggggg tgggggtggg gtgggattag ataaatgcct 2461 gctctttact gaaggctctt tactattgct ttatgataat gtttcatagt tggatatcat 2521 aatttaaaca agcaaaacca aattaagggc cagctcattc ctcccactca tgatctatag 2581 atctatagat ctctcgtggg atcattgttt ttctcttgat tcccactttg tggttctaag 2641 tactgtggtt tccaaatgtg tcagtttcat agcctgaaga acgagatcag cagcctctgt 2701 tccacataca cttcattctc agtattgttt tgccaagttc taattccatc agaagctggt 2761 cgagatccgg aacccttaat ataacttcgt ataatgtatg ctatacgaag ttattaggtc 2821 cctcgaagag gttcactagg atccggtacc cagcttttgt tccctttagt gagggttaat 2881 tgcgcgcttg gcgtaatcat ggtcatagct gtttcctgtg tgaaattgtt atccgctcac 2941 aattccacac aacatacgag ccggaagcat aaagtgtaaa gcctggggtg cctaatgagt 3001 gagctaactc acattaattg cgttgcgctc actgcccgct ttccagtcgg gaaacctgtc 3061 gtgccagctg cattaatgaa tcggccaacg cgcggggaga ggcggtttgc gtattgggcg 3121 ctcttccgct tcctcgctca ctgactcgct gcgctcggtc gttcggctgc ggcgagcggt 3181 atcagctcac tcaaaggcgg taatacggtt atccacagaa tcaggggata acgcaggaaa 3241 gaacatgtga gcaaaaggcc agcaaaaggc caggaaccgt aaaaaggccg cgttgctggc 3301 gtttttccat aggctccgcc cccctgacga gcatcacaaa aatcgacgct caagtcagag 3361 gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggaa gctccctcgt 3421 gcgctctcct gttccgaccc tgccgcttac cggatacctg tccgcctttc tcccttcggg 3481 aagcgtggcg ctttctcata gctcacgctg taggtatctc agttcggtgt aggtcgttcg 3541 ctccaagctg ggctgtgtgc acgaaccccc cgttcagccc gaccgctgcg ccttatccgg 3601 taactatcgt cttgagtcca acccggtaag acacgactta tcgccactgg cagcagccac 3661 tggtaacagg attagcagag cgaggtatgt aggcggtgct acagagttct tgaagtggtg 3721 gcctaactac ggctacacta gaaggacagt atttggtatc tgcgctctgc tgaagccagt 3781 taccttcgga aaaagagttg gtagctcttg atccggcaaa caaaccaccg ctggtagcgg 3841 tggttttttt gtttgcaagc agcagattac gcgcagaaaa aaaggatctc aagaagatcc 3901 tttgatcttt tctacggggt ctgacgctca gtggaacgaa aactcacgtt aagggatttt 3961 ggtcatgaga ttatcaaaaa ggatcttcac ctagatcctt ttaaattaaa aatgaagttt 4021 taaatcaatc taaagtatat atgagtaaac ttggtctgac agttaccaat gcttaatcag 4081 tgaggcacct atctcagcga tctgtctatt tcgttcatcc atagttgcct gactccccgt 4141 cgtgtagata actacgatac gggagggctt accatctggc cccagtgctg caatgatacc 4201 gcgagaccca cgctcaccgg ctccagattt atcagcaata aaccagccag ccggaagggc 4261 cgagcgcaga agtggtcctg caactttatc cgcctccatc cagtctatta attgttgccg 4321 ggaagctaga gtaagtagtt cgccagttaa tagtttgcgc aacgttgttg ccattgctac 4381 aggcatcgtg gtgtcacgct cgtcgtttgg tatggcttca ttcagctccg gttcccaacg 4441 atcaaggcga gttacatgat cccccatgtt gtgcaaaaaa gcggttagct ccttcggtcc 4501 tccgatcgtt gtcagaagta agttggccgc agtgttatca ctcatggtta tggcagcact 4561 gcataattct cttactgtca tgccatccgt aagatgcttt tctgtgactg gtgagtactc 4621 aaccaagtca ttctgagaat agtgtatgcg gcgaccgagt tgctcttgcc cggcgtcaat 4681 acgggataat accgcgccac atagcagaac tttaaaagtg ctcatcattg gaaaacgttc 4741 ttcggggcga aaactctcaa ggatcttacc gctgttgaga tccagttcga tgtaacccac 4801 tcgtgcaccc aactgatctt cagcatcttt tactttcacc agcgtttctg ggtgagcaaa 4861 aacaggaagg caaaatgccg caaaaaaggg aataagggcg acacggaaat gttgaatact 4921 catactcttc ctttttcaat attattgaag catttatcag ggttattgtc tcatgagcgg 4981 atacatattt gaatgtattt agaaaaataa acaaataggg gttccgcgca catttccccg 5041 aaaagtgcca c //